Obtained from https://www.encodeproject.org/files/ENCFF001TDO/. The ENCODE blacklist includes regions of the hg19 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment. Removal of ENCODE blacklist is recommended for quality measure.
data("hg19_blacklist")An object of class GRanges of length 411.
The code to prepare the .Rda file is:
# blacklisted regions were directly downloaded # from https://www.encodeproject.org/files/ENCFF001TDO/ hg19_blacklist <-
ChIPseeker::readPeakFile(file.path(path), as = "GRanges") usethis::use_data(hg19_blacklist, overwrite = TRUE)