Translate genome — translate_genome • EpiCompare

Translate the name of a genome build from one format to another.

translate_genome(
  genome,
  style = c("UCSC", "Ensembl", "NCBI"),
  default_genome = NULL,
  omit_subversion = TRUE
)

Arguments

genome: A character vector of genomes equivalent to UCSC version or Ensembl Assemblies
style: A single value equivalent to "UCSC" or "Ensembl" specifying the output genome
default_genome: Default genome build when genome is NULL.
omit_subversion: Omit any subversion suffixes after the ".".

Standardized genome build name as a character string.

genome <- translate_genome(genome="hg38", style="Ensembl")
genome2 <- translate_genome(genome="mm10", style="UCSC")