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Test to see which cell types are more enriched in magmaPath2 than magmaPath1

Source: R/compare_trait_enrichment.r
compare_trait_enrichments.Rd

Test to see which cell types are more enriched in magmaPath2 than magmaPath1

Usage

compare_trait_enrichments(
  magmaPath1 = NA,
  magmaPath2 = NA,
  magma1 = NA,
  magma2 = NA,
  annotLevel,
  ctd
)

Arguments

magmaPath1

A magma results file

magmaPath2

A magma results file

magma1

A magma results data structure

magma2

A magma results data structure

annotLevel

Annotation level of the CTD / results file to use

ctd

Cell type data structure containing $specificity_quantiles

Value

File path for the genes.out file