Drop genes within MHC

drop_genes_within_mhc(geneLocFilePath, geneLocFilePathOut)

Arguments

geneLocFilePath

The gene loc file as downloaded from MAGMA website (e.g. NCBI37.3.gene.loc).

geneLocFilePathOut

The file path to write the gene loc file with MHC removed.

Value

Null (the output is written to the filepath provided as an argument).

Examples

gene_loc <- MAGMA.Celltyping:::get_genomeLocFile(build = "GRCH37")
#>  All local files already up-to-date!
MAGMA.Celltyping::drop_genes_within_mhc(geneLocFilePath = gene_loc,
                                        geneLocFilePathOut = gene_loc)