Import CellTypeDatasets (CTD) generated by EWCE.

get_ctd(
  ctd_name = c("ctd_AIBS", "ctd_allKI", "ctd_BlueLake2018_FrontalCortexOnly",
    "ctd_BlueLake2018_VisualCortexOnly", "ctd_DivSeq", "ctd_DRONC_human",
    "ctd_DRONC_mouse", "ctd_Saunders", "ctd_Tasic", "ctd_Zeisel2015", "ctd_Zeisel2018",
    "ctd_TabulaMuris_facs", "ctd_TabulaMuris_droplet", "ctd_Aerts2018",
    "ctd_FlyCellAtlas", "ctd_Avalos2019", "ctd_DescartesHuman", "ctd_DescartesMouse",
    "ctd_HumanCellLandscape", "ctd_Jiang2021", "ctd_NonHumanPrimateCellAtlas",
    "ctd_Raj2018", "ctd_Raj2018", "ctd_Farnsworth2020"),
  tag = "v2.0.8",
  .token = gh::gh_token(),
  storage_dir = tools::R_user_dir(package = "MAGMA.Celltyping", which = "cache")
)

Arguments

ctd_name

Name of one or more CellTypeDatset objects to import.

tag

tag for the GitHub release to which this data should be attached.

.token

GitHub authentication token, see [gh::gh_token()]

storage_dir

Folder in which to save the CellTypeDatset.

Value

CellTypeDataset object, or a named list of CellTypeDataset objects.

Examples

ctd <- MAGMA.Celltyping::get_ctd("ctd_AIBS")
#> Downloading 1 CellTypeDataset file(s).
#>  All local files already up-to-date!