Get genome build for sumstats — get_genomebuild_for

Compare the SNP:CHR:BP data against a dataset of all Hapmap3 SNP:CHR:BP data for two genome builds (GRCh37 and GRCh38). Evaluate which genome build matches the SNP locations from the sum stats file.

get_genomebuild_for_sumstats(path)

Arguments

path: Filepath of the summary statistics file

Value

Either 'GRCh37' or 'GRCh38'

Examples

if (FALSE) { # \dontrun{
path <- MAGMA.Celltyping::get_example_gwas()
genome_build <- MAGMA.Celltyping::get_genomebuild_for_sumstats(path = path)
} # }