Install the MAGMA command line tool — magma

Checks whether MAGMA is currently installed, and if not, tries to automatically install it. For a list of all changes across MAGMA versions, please see here.

magma_install(
  dest_dir = find_install_dir(),
  desired_version = "latest",
  upgrade = FALSE,
  verbose = TRUE
)

Source

MAGMA website

MAGMA.celltyping documentation

Arguments

dest_dir: Folder in which to install MAGMA.
desired_version: Desired version of MAGMA.
upgrade: If MAGMA is already installed and is not the latest version, should it be upgraded to the latest version? (Default: FALSE).
verbose: Print messages.

Value

Path to MAGMA executable.

Examples

magma <- magma_install()
#> Installed MAGMA version: v1.10
#> Skipping MAGMA installation.
#> The desired_version of MAGMA is currently installed: v1.10
#> Using: magma_v1.10