Standardise the column headers in the Summary Statistics files — standardise.sumstats.column.headers • MAGMA.Celltyping

Use a reference data table of common column header names (stored as MAGMA.Celltyping::sumstatsColHeaders) convert them to a standard set, i.e. chromosome –> CHR. This function does not check that all the required column headers are present. The amended header is written directly back into the file.

standardise.sumstats.column.headers(path)

Arguments

path: File path for the summary statistics file.

Value

The amended column headers (also the column headers will be written directly into the summary statistics file)

Examples

if (FALSE) { # \dontrun{ 
path <- MAGMA.Celltyping::get_example_gwas()
col_headers <- MAGMA.Celltyping::standardise.sumstats.column.headers(
    path = path)
} # }