Map SNPs to genes: cS2G — map_snps2genes

Map SNPs (both coding and non-coding) onto genes using the combined SNP-to-gene (cS2G) strategy..

map_snps2genes_cs2g(
  sumstats,
  ref_genome = "GRCh37",
  dataset = "Nasser2020",
  abc = NULL,
  nCores = 1,
  verbose = TRUE
)

Arguments

nCores	Number of cores to parallelise across.
verbose	Print messages.
sumstats_file	GWAS summary statistics munged by format_sumstats. Can be a path to the saved file or data.table.
method	Method to use for mapping SNPs to genes.

gene_hits data.table