Subset a SingleCellExperiment for genes meeting expressivity criteria

This function is applied after the subsetting of a SCE (e.g. celltype). It's useful to subset before differential expression analysis.

.filter_sce_genes_for_de(sce, min_counts = 1L, min_cells_pc = 0.1)

Arguments

sce

a SingleCellExperiment object

Value

sce a SingleCellExperiment object

See also

Other differential gene expression: .generate_model_from_vars(), .perform_de_with_mast(), .preprocess_sce_for_de(), perform_de(), pseudobulk_sce(), report_de(), volcano_plot()