Read a SingleCellExperiment from a folder

Source: R/read_sce.R

Read a SingleCellExperiment from a folder: -

  • Feature-barcode-matrix files: -

    • 'barcodes.tsv.gz'

    • 'features.tsv.gz'

    • 'matrix.mtx.gz'

  • Metadata: -

    • 'sce_rowdata.tsv'

    • 'sce_coldata.tsv'

    • 'scecoldata_classes.tsv'

  • reducedDim(sce, x) (if present): -

    • 'ReducedDim_x.tsv'

read_sce(folder_path, read_metadata = FALSE)

Arguments

folder_path

path to save the SingleCellExperiment

read_metadata

Enable import of metadata if previously saved.

Value

sce a SingleCellExperiment object

See also

Other import and export functions: read_celltype_mappings(), read_sparse_matrix(), write_celltype_mappings(), write_sce(), write_sparse_matrix()