Generate a report for dataset integration, dims reduction, and clustering

Generate a report for dataset integration, dims reduction, and clustering

report_integrated_sce(
  sce,
  report_folder_path = getwd(),
  report_file = "integrate_scFlow",
  categorical_covariates = list()
)

Arguments

sce

a SingleCellExperiment object

report_folder_path

folder path to save the report

report_file

filename for report (without an extension)

categorical_covariates

list of categorical variables

Value

sce SingleCellExperiment object annotated with reducedDims

See also

Other Data integration: integrate_sce(), liger_preprocess(), liger_reduce_dims()