Human Phenotype Ontology: phenotype frequencies

Source: R/data.R

Frequency of each HPO term WITHIN all associated diseases (as opposed to the general population). In order of increasing frequency:

HP:0040284

"Very rare (<4-1%)"

HP:0040283

"Occasional (29-5%)"

HP:0040282

"Frequent (79-30%)"

HP:0040281

"Very frequent (99-80%)"

HP:0040280

"Obligate (100%)"

data("hpo_frequencies")

Format

data.table

Source

Column explanations

annot <- load_phenotype_to_genes("phenotype.hpoa") hpo_frequencies <- HPOExplorer:::parse_pheno_frequency(annot=annot) hpo_frequencies <- HPOExplorer:::as_ascii(dat=hpo_frequencies) data.table::setcolorder(hpo_frequencies,c("disease_id","hpo_id")) usethis::use_data(hpo_frequencies, overwrite = TRUE)