Given a DGE analysis output, this outputs a subset of the analysis with the genes laying only on the sex chromosomes (X/Y)

Given a DGE analysis output, this outputs a subset of the analysis with the genes laying only on the sex chromosomes (X/Y)

sex_chromosome_DEGs(allGenes, ensemblID_colname = "name")

Arguments

allGenes

list whose elements are DGE analysis output for each celltype in a dataset (e.g. as returned by "DGE_analysis.R", but subsetted to "celltype_all_genes")

ensemblID_colname

the column name within each DGE analysis output in allGenes, which contains the ensembl IDs for each gene

Value

the DGE analysis output restricted to just the genes that lay on the sex chromosomes