document_and_share

Strategies for documentation and sharing of data analyses.

Presentation

• How to share powerpoints

  1. File -> Share -> Share...
  2. Share via OneDrive.
  3. File -> Share -> Copy link
  4. Navigate to the link and the click Share button in the upper right for more control over share settings.

Rmarkdown

• Template

• Example

• Plotly vignette

Jupyter

• Template

• Example

  • Animation example

Conda

• Here you can find a yaml file that can be used to construct a conda env (named “pyre”) that includes R, Python, and Jupyter, and all the necessary supporting packages.

1. Create conda env

conda env create -f https://github.com/neurogenomics/document_and_share/raw/main/templates/env.yml

1. Add env to Jupyter

python -m ipykernel install --user --name=pyre

1. Activate conda env

conda activate pyre

1. Start Jupyter

jupyter notebook

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