Find x most specific genes

Source: R/map_with_ewce.R

Find x most specific genes

.get_x_most_specific_genes(
  ct,
  annotLevel = 5,
  howMany = 20,
  ctd,
  exprPercentile = 0.9
)

Arguments

ct

from colnames of ctdToMap specificity

howMany

number of genes to return

ctd

the ctd to analyse

exprPercentile

must be expressed in at least this proportion

annot_level

annotation level

Value

output the x most specific genes

See also

Other clustering and dimensionality reduction: .map_celltypes(), .map_celltypes_with_ewce(), cluster_sce(), map_custom_celltypes(), reduce_dims_sce()

Author

Nathan Skene / Combiz Khozoie