Map cluster celltypes with EWCE

Source: R/map_with_ewce.R

Maps cluster celltypes using EWCE

.map_celltypes_with_ewce(
  ctd,
  l_ctd,
  inputSpecies = "human",
  annotation_level = 1,
  ctd_species = "human",
  reps = 1000,
  num_markers = 50
)

Arguments

ctd

ctd for current expt

l_ctd

a list of reference ctd's

inputSpecies

species of ctd

annotation_level

level of annotation

ctd_species

species of l_ctd

reps

number pf repitions performed by EWCE boostrap

Value

sce a SingleCellExperiment object annotated with sample metadata

See also

Other clustering and dimensionality reduction: .get_x_most_specific_genes(), .map_celltypes(), cluster_sce(), map_custom_celltypes(), reduce_dims_sce()

Author

Nathan Skene / Combiz Khozoie