Example anndata

anndata R package has a major bug currently. Thus, add_filename must be kept False until this is fixed.

example_anndata(
  return_path = F,
  save_dir = tempdir(),
  backed = c("r", "r+"),
  overwrite = T,
  add_filename = F,
  verbose = T
)

Examples

if (FALSE) {
#### Setup conda env ####
## Option 1: Point to where anndata is installed (or should be installed)
conda_dir <- dirname(dirname(reticulate::conda_list()[1,]$python))
reticulate::use_condaenv(condaenv = conda_dir)
reticulate::conda_install(conda = conda_dir, packages = "loompy", pip = T)
## Option 2: Just run anndata::install_anndata() and will install via miniconda
anndata::install_anndata(method = "conda", conda=conda_dir)

#### Usage ####
adata <- example_anndata()
}