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EWCEctd_to_sce()
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Convert: EWCEctd ==> SingleCellExperiment |
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EWCEctd_to_seurat()
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Convert: EWCEctd ==> Seurat |
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EWCElist_to_sce()
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Convert: EWCElist ==> SingleCellExperiment |
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EWCElist_to_seurat()
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Convert: EWCElist ==> Seurat |
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anndata_to_sce()
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Convert: Anndata ==> SingleCellExperiment |
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anndata_to_seurat()
|
Convert: Anndata ==> Seurat |
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example_EWCElist
|
Example EWCElist |
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example_anndata()
|
Example anndata |
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example_ctd
|
Example CellTypeDataset |
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example_loom()
|
Example loom |
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example_sce
|
Example SingleCellExperiment |
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example_seurat
|
Example Seurat |
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ingest_data()
|
Import and standardize scRNAseq data across different formats |
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loadRData()
|
loadRData |
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loom_to_sce()
|
Convert: loom ==> SingleCellExperiment |
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loom_to_seurat()
|
Convert: loom ==> Seurat |
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matrix_to_sce()
|
Convert: matrix ==> SingleCellExperiment |
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matrix_to_seurat()
|
Convert: matrix ==> Seurat |
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scKirby-package
|
scKirby: Automated ingestion and conversion of various single-cell data formats. |
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sce_cbind()
|
Combine several SingleCellExperiment objects from different batches/experiments |
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sce_to_seurat()
|
Convert: SingleCellExperiment ==> Seurat |
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seurat_to_sce()
|
Convert: Seurat ==> SingleCellExperiment |