Changelog

get_opentargets: Limit threads and files to import in example.
Merge fixes by @HDash https://github.com/neurogenomics/KGExplorer/pull/2
dt_to_kg: fix reference to graph g.
get_hpo
- Remove ported function to avoid conflicting namespaces. Instead, simply use get_ontology("hpo")

get_hpo
- Port function from HPOExplorer package to prevent circular dependency.

test-get_ontology_levels
- Check for range rather than fixed values.
filter_ontology
- Move terms processing block to after check for character, as appropriate.
get_ontology_dict
- Add error handling for missing alternative_terms when include_alternative_terms=TRUE.
plot_ontology_heatmap
- Fix default value for argument annot– cast one@elementMetadata to data.frame first.
prune_ancestors
- Add value for argument id_col in example.
set_cores
- Reduce workers during R CMD CHECK if required.

map_ontology_terms:
- Can now recognize alternative_terms slot in simona object (https://github.com/jokergoo/simona/issues/6)
- Automatically uses “short_id” when “id” is set, as the “id” column can sometimes contain long ID formats (http://purl.obolibrary.org/obo/MONDO_0100229 vs. MONDO:0100229)

KGExplorer 0.99.06