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Changelog

Source: NEWS.md

MotifPeeker 0.99.7

Miscellaneous

  • Remove cat() calls in functions.
  • Implement helper check_input() to validate input before passing them to other functions.
  • Run examples and tests only if MEME Suite is detected (only for functions which require MEME Suite).

MotifPeeker 0.99.5 / 0.99.6

Miscellaneous

  • Replace magrittr import by dplyr::%>%.
  • Reduce the number of exported functions.
  • Move utility functions to ‘utilities.R’.
  • Allow vignettes to run without MEME suite installed.
  • Remove stopper() wrapper around stop().
  • Use message() for parallel executions

MotifPeeker 0.99.4

Miscellaneous

  • Switch to a smaller file to download in check_ENCODE example.
  • Move some code outside \donttest{} to prevent BiocCheck() error about missing examples.

MotifPeeker 0.99.3

Miscellaneous

  • Wrap certain examples under \donttest{} to reduce R CMD CHECK runtime.
  • [GitHub] Add CODECOV_TOKEN secret to rworkflows.
  • Skip running tests which require download if offline.

MotifPeeker 0.99.2

Miscellaneous

  • Substitute system() with system2().
  • Reduce denovo_motifs in examples and tests to reduce R CMD CHECK runtime.
  • Add .BBSoptions to .Rbuildignore.

MotifPeeker 0.99.1

Miscellaneous

  • .BBSoptions added to skip Windows builders on Bioconductor.

MotifPeeker 0.99.0

New features

  • MotifPeeker submitted to Bioconductor.