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MotifPeeker 0.99.11
Miscellaneous
- Correct “de-novo motif discovery” term to “motif discovery”. STREME does not perform de-novo motif discovery.
- Add package version to report header.
MotifPeeker 0.99.9 / 0.99.10
MotifPeeker 0.99.8
Miscellaneous
- Optimise examples and remove
\donttest{} blocks.
- Add GitHub Actions for rworkflows without MEME Suite.
MotifPeeker 0.99.7
New Features
- Replace
workers argument with BPPARAM. Give users more control over the BiocParallel implementation.
Miscellaneous
- Remove
cat() calls in functions.
- Implement helper
check_input() to validate input before passing them to other functions.
- Run examples and tests only if MEME Suite is detected (only for functions which require MEME Suite).
MotifPeeker 0.99.5 / 0.99.6
Miscellaneous
- Replace
magrittr import by dplyr::%>%.
- Reduce the number of exported functions.
- Move utility functions to ‘utilities.R’.
- Allow vignettes to run without MEME suite installed.
- Remove
stopper() wrapper around stop().
- Use message() for parallel executions
MotifPeeker 0.99.4
Miscellaneous
- Switch to a smaller file to download in
check_ENCODE example.
- Move some code outside
\donttest{} to prevent BiocCheck() error about missing examples.
MotifPeeker 0.99.3
Miscellaneous
- Wrap certain examples under
\donttest{} to reduce R CMD CHECK runtime.
- [GitHub] Add
CODECOV_TOKEN secret to rworkflows.
- Skip running tests which require download if offline.
MotifPeeker 0.99.2
Miscellaneous
- Substitute
system() with system2().
- Reduce
denovo_motifs in examples and tests to reduce R CMD CHECK runtime.
- Add
.BBSoptions to .Rbuildignore.
MotifPeeker 0.99.1
Miscellaneous
-
.BBSoptions added to skip Windows builders on Bioconductor.
MotifPeeker 0.99.0
New features
-
MotifPeeker submitted to Bioconductor.