List all species currently supported by orthogene.
Wrapper function for map_species.
When method=NULL, all species from all available
methods will be returned.
all_species(method = NULL, verbose = TRUE)R package to use for gene mapping:
"gprofiler"Slower but more species and genes.
"homologene"Faster but fewer species and genes.
"babelgene"Faster but fewer species and genes. Also gives consensus scores for each gene mapping based on a several different data sources.
Print messages.
data.table of species names, provided in multiple formats.
species_dt <- all_species()
#> Retrieving all organisms available in homologene.
#> Returning table with all species.
#> Retrieving all organisms available in gprofiler.
#> Using stored `gprofiler_orgs`.
#> Returning table with all species.
#> Retrieving all organisms available in babelgene.
#> Returning table with all species.