Mean pseudobulk single-cell RNA-seq Transcript expression matrix.
Data originally comes from Zeisel et al., 2018 (Cell).
data("exp_mouse_enst")sparse matrix
Publication
data("exp_mouse")
mapped_genes <- map_genes(genes = rownames(exp_mouse)[seq(1,100)],
target = "ENST",
species = "mouse",
drop_na = FALSE)
exp_mouse_enst <- exp_mouse[mapped_genes$input,]
rownames(exp_mouse_enst) <- mapped_genes$target
all_nas <- orthogene:::find_all_nas(rownames(exp_mouse_enst))
exp_mouse_enst <- exp_mouse_enst[!all_nas,]
exp_mouse_enst <- phenomix::add_noise(exp_mouse_enst)
usethis::use_data(exp_mouse_enst, overwrite = TRUE)