Map uPheno plot — plot_upheno • KGExplorer

Generate multiple kinds of plots summarising mappings of phenotypes and genes between the HPO and various non-human ontologies within uPheno.

plot_upheno(
  pheno_map_genes_match = NULL,
  subset_db1 = "HP",
  types = c("rainplot", "scatterplot", "heatmap")
)

Arguments

pheno_map_genes_match: uPheno cross-species mapping data generated by map_upheno_data.
subset_db1: A character vector of reference ontologies to subset pheno_map_genes_match by.
types: A character vector of plot types to generate.

A named list of ggplot2 objects.

if (FALSE) {
pheno_map_genes_match <- map_upheno_data()
upheno_plots <- plot_upheno(
  pheno_map_genes_match = pheno_map_genes_match)
}