Generate plots and a QC report for a SingleCellExperiment

Generate plots and a QC report for a SingleCellExperiment

report_qc_sce(
  sce,
  report_folder_path = getwd(),
  report_file = "qc_report_scflow"
)

Arguments

sce

a SingleCellExperiment object

report_folder_path

folder path to save the report

report_file

filename for report (without an extension)

Value

sce a annotated SingleCellExperiment object

See also

Other annotation functions: .preprocess_seurat_object(), annotate_celltype_metrics(), annotate_integrated_sce(), annotate_merged_sce(), annotate_sce(), annotate_sce_cells(), annotate_sce_genes(), filter_sce(), find_cells(), find_singlets(), generate_sce(), map_ensembl_gene_id(), merge_sce(), read_metadata(), report_celltype_metrics(), report_celltype_model(), report_merged_sce(), run_doubletfinder(), sce_to_seu()