Merge Multiple SingleCellExperiment Objects

Merge Multiple SingleCellExperiment Objects

merge_sce(
  sce_l,
  ensembl_mapping_file = NULL,
  species = getOption("scflow_species", default = "human")
)

Arguments

sce_l

a list of SingleCellExperiment objects, or, folder_paths to SingleCellExperiment objects to be read in with read_sce

ensembl_mapping_file

path to the mappings tsv file

species

human or mouse

Value

sce a annotated SingleCellExperiment object

See also

Other annotation functions: .preprocess_seurat_object(), annotate_celltype_metrics(), annotate_integrated_sce(), annotate_merged_sce(), annotate_sce(), annotate_sce_cells(), annotate_sce_genes(), filter_sce(), find_cells(), find_singlets(), generate_sce(), map_ensembl_gene_id(), read_metadata(), report_celltype_metrics(), report_celltype_model(), report_merged_sce(), report_qc_sce(), run_doubletfinder(), sce_to_seu()