Contains pseudobulk data (mean expression per cell-type) from 11 different datasets. Mean expression matrices have been downsampled to 1,000/21,000 genes.
pseudo_sce
An object of class SingleCellExperiment with 1000 rows and 801 columns.
if (FALSE) { set.seed(2021) pseudo_sce <- scKirby::ingest_data("/Users/schilder/Desktop/model_celltype_conservation/raw_data/scRNAseq/merged/merged.11datasets.h5ad", save_output = F) SingleCellExperiment::reducedDim(pseudo_sce,"UMAP") <- data.frame(SummarizedExperiment::colData(pseudo_sce)[,c("UMAP.1","UMAP.2")]) pseudo_sce <- pseudo_sce[sample(1:nrow(pseudo_sce),1000), ] usethis::use_data(pseudo_sce, overwrite = T) }