All functions

FindVariableFeatures_split()

Find variable features within subsets

get_ancestors()

Get ancestors to Cell Ontology IDs

gpt()

GPT

plot_tfidf()

Plot tf-idf results in reduced dimensions

pseudo_sce

Example SingleCellExperiment object

pseudo_seurat

Example Seurat object

run_gpt()

Run GPT on single-cell data

run_tfidf()

Run TF-IDF on single-cell data

search_neighbors()

Search nearest neighbors

seurat_pipeline()

Run standardized Seurat pipeline

tfidf()

TF-IDF

wordcloud_tfidf()

Wordcloud from tf-idf results