Contains pseudobulk data (mean expression per cell-type) from 11 different datasets. Mean expression matrices have been downsampled to 1,000/21,000 genes.
pseudo_seurat
An object of class Seurat with 1000 rows and 801 columns.
if (FALSE) { set.seed(2021) pseudo_seurat <- scKirby::ingest_data("/Users/schilder/Desktop/model_celltype_conservation/raw_data/scRNAseq/merged/merged.11datasets.h5ad", output_type="Seurat", save_output = F) pseudo_seurat <- pseudo_seurat[sample(1:nrow(pseudo_seurat),1000), ] usethis::use_data(pseudo_seurat, overwrite = T) }