Plot motif-enrichment for individual experiments

Visualises the result from get_df_enrichment for a single motif by producing a plotly bar plot with the motif enrichment comparisons for one comparison dataset pair.

Usage

plot_enrichment_individual(
  result,
  enrichment_df,
  comparison_i,
  motif_i,
  label_colours,
  reference_index = 1,
  html_tags = TRUE
)

Arguments

result

A list with the following elements:

peaks

A list of peak files generated using read_peak_file.

alignments

A list of alignment files.

exp_type

A character vector of experiment types.

exp_labels

A character vector of experiment labels.

read_count

A numeric vector of read counts.

peak_count

A numeric vector of peak counts.

enrichment_df

A data frame containing the motif enrichment results, produced using get_df_enrichment.

comparison_i

The index of the comparison dataset to plot.

motif_i

The index of the motif to plot.

label_colours

A vector with colours (valid names or hex codes) to use for "No" and "Yes" bar segments.

reference_index

An integer specifying the index of the peak file to use as the reference dataset for comparison. Indexing starts from 1. (default = 1)

html_tags

Logical. If TRUE, returns the plot as a tagList object.

Value

A plotly object with the peak motif enrichment data. If html_tags is TRUE, the function returns a tagList object instead.

See also

Other plot functions: plot_enrichment_overall(), plot_motif_comparison()