Package index • MSTExplorer

All functions
`add_ctd()`	Add CellTypeDataset
`add_logfc()`	Add log fold-change
`add_symptom_results()`	Add symptom results
`agg_results()`	Aggregate results
`celltype_maps`	Cell-type maps
`correlation_heatmap()`	Plot heatmap
`create_dt()`	Interactive DT
`ewce_para()`	EWCE parallel
`example_targets`	Example prioritised targets
`gen_overlap()`	Generate overlap
`gen_results()`	Generate results
`get_bg()`	Get background genes
`get_unfinished_list_names()`	Get unfinished list names
`ggnetwork_plot_full()`	Create interactive network plot start to finish
`load_example_ctd()`	Load example CTD (Descartes)
`load_example_results()`	Load example results
`map_celltype()`	Map cell type
`map_tissue()`	Map cell type
`merge_results()`	Merge results
`plot_`	Plot functions
`plot_bar_dendro()`	Plot bar dendrogram
`plot_bar_dendro_facets()`	Plot bar branches
`plot_bar_summary()`	Summary plot
`plot_celltype_severity()`	Plot cell type severity
`plot_congenital_annotations()`	Plot congenital annotations
`plot_differential_outcomes()`	Plot differential outcomes
`plot_differential_outcomes_heatmap()`	Plot differential outcomes: heatmap
`plot_frequency_bar()`	Gene and phenotype frequencies bar plot
`plot_frequency_histogram()`	Gene and phenotype frequencies histogram
`plot_ontology_levels()`	Plot ontology levels
`plot_report()`	Report plot
`plot_results_distributions()`	Plot results distributions
`predict_celltypes()`	Predict cell types
`prioritise_targets()`	Prioritise target genes
`prioritise_targets_grid()`	Prioritise targets grid
`prioritise_targets_network()`	Prioritise targets network
`run_congenital_enrichment()`	Run congenital enrichment analyses
`run_phenomix()`	Run phenomix
`subset_phenos()`	Subset RD EWCE results
`subset_results()`	Subset EWCE results
`summarise_results()`	Summarise results
`terminal_celltypes()`	Terminal cell types
`test_target_celltypes()`	Test target cell types
`tissue_maps`	Anatomy maps
`ttd_check()`	Gene therapy targets
`validate_associations_correlate_ctd()`	Validate associations: correlate CellTypeDataset
`validate_associations_mkg()`	Validate associations with the Monarch Knowledge Graph

Reference

All functions